csg_density - Online in the Cloud

PROGRAM:

NAME

csg_density - Part of the VOTCA package

SYNOPSIS

csg_density [OPTION] [OPTIONPARAMETERS]

DESCRIPTION

Calculates the mass density distribution along a box axis or radial density profile from
reference point

Please visit the program site at __http://www.votca.org__.

OPTIONS

Allowed options:

-h [ --help ]
produce this help message

--top arg
atomistic topology file

Mapping options:

--cg arg
[OPTIONAL] coarse graining mapping definitions (xml-file). If no file is given,
program acts on original trajectory

Specific options::

--axis arg (=r)
[x|y|z|r] density axis (r=spherical)

--bins arg (=50)
bins

--out arg
Output file

--rmax arg
rmax (default for [r] =min of all box vectors/2, else l )

--scale arg (=1)
scale factor for the density

--molname arg (=*)
molname

--filter arg (=*)
filter bead names

--ref arg
reference zero point

Trajectory options:

--trj arg
atomistic trajectory file

--begin arg (=0)
skip frames before this time

--first-frame arg (=0)
start with this frame

--nframes arg
process the given number of frames

AUTHORS

Written and maintained by the VOTCA Development Team <[email protected]>

This Manual Page was converted from t2t format to the this format by txt2tags
(http://txt2tags.org) ! The t2t file was extracted from 'csg_density --help' by help2t2t
(version 1.2.4 )

COPYRIGHT

Copyright 2009-2011 The VOTCA Development Team (http://www.votca.org)

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file
except in compliance with the License. You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the
License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND,
either express or implied. See the License for the specific language governing
permissions and limitations under the License.

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