This is the command fa2dna that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
برنامج:
اسم
fa2dna - تنسيق قاعدة بيانات fasta للاستخدام مع ANFO
موجز
fa2dna [ خيار | ملف ]
الوصف
fa2dna reads one or more files in fasta format and reformats them into a database suitable
لـ معلومات(1). The input file(s) can contain more than one sequence, and each sequence can
be broken up into multiple contigs by a stretch of Ns. All IUPAC ambiguity codes are
بدعم كامل.
OPTIONS
-V ، - الإصدار
اطبع رقم النسخة واخرج.
-o ملف ، - ملف الإخراج
كتابة الإخراج إلى ملف.ملف should end in .dna، لان معلومات and some downstream
tools might stumble over a different extension. Default is the genome name with
هيه .dna تمديد.
-m N, --maxn N
Sets the maximum number of Ns to be interpreted as IUPAC ambiguity codes to N؛ أي
longer stretch is interpreted as separing contigs. Default is 2.
-g name, --genome name
Sets the genome name to الاسم. This name is stored in the output file and will be
استعمل من قبل معلومات to identify the matched genome in its output. The genome should be a
prefix of the output file name to allow downstream tools to find it. The name
should be short, but unique, something like "hg18" or "pt2" for human or chimpanzee
genomes would work fine.
-د النص، -نص الوصف
يضيف نص as description to the metadata. This is purely informational.
-v ، - الإسراف
Causes a progress indicator to be printed.
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