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SecStAnT download for Linux

Free download SecStAnT Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named SecStAnT whose latest release can be downloaded as SecStAnT.jar. It can be run online in the free hosting provider OnWorks for workstations.

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SecStAnT


DESCRIPTION

SecStAnT is a tool for the automatic creation of data-sets of structures from Protein Data Bank (PDB) with user-defined structural composition, and for the calculation of their internal variables distributions.

SecStAnT is able to
1. Select from PDB data sets of structures based on user specified secondary structures (defined based on internal PDB classification or on DSSP) and/or sequence motives.
2. Build Data-sets at different levels of resolution (all atoms, only backbone, only Cα, ...)
3. Evaluate statistical distributions of internal variables:
a. single variable distributions (including the most relevant in the atomistic representation, e.g. PHI and PSI and a number of those for the Cα based representation)
b. two variables correlations (including the PHI-PSI Ramachandran map and its equivalent in the Cα based representation)
c. three variables correlations




User interface

Java Swing


Programming Language

Java


Categories

Bio-Informatics

This is an application that can also be fetched from https://sourceforge.net/projects/secstant/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


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