EnglishFrenchSpanish

OnWorks favicon

gsasnp2 to run in Windows online over Linux online downloa

Free download gsasnp2 to run in Windows online over Linux online Windows app to run online win Wine in Ubuntu online, Fedora online or Debian online

This is the Windows app named gsasnp2 to run in Windows online over Linux online whose latest release can be downloaded as gsasnp2-linux-cmd-ubuntu.zip. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named gsasnp2 to run in Windows online over Linux online with OnWorks for free.

Follow these instructions in order to run this app:

- 1. Downloaded this application in your PC.

- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 3. Upload this application in such filemanager.

- 4. Start any OS OnWorks online emulator from this website, but better Windows online emulator.

- 5. From the OnWorks Windows OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 6. Download the application and install it.

- 7. Download Wine from your Linux distributions software repositories. Once installed, you can then double-click the app to run them with Wine. You can also try PlayOnLinux, a fancy interface over Wine that will help you install popular Windows programs and games.

Wine is a way to run Windows software on Linux, but with no Windows required. Wine is an open-source Windows compatibility layer that can run Windows programs directly on any Linux desktop. Essentially, Wine is trying to re-implement enough of Windows from scratch so that it can run all those Windows applications without actually needing Windows.

SCREENSHOTS

Ad


gsasnp2 to run in Windows online over Linux online


DESCRIPTION

* GSA-SNP2 is a successor of GSA-SNP (Nam et al. 2010, NAR web server issue). GSA-SNP2 accepts human GWAS summary data (rs numbers, p-values) or gene-wise p-values and outputs pathway genesets ‘enriched’ with genes associated with the given phenotype. It also provides both local and global protein interaction networks in the associated pathways.

* Article: SYoon, HCTNguyen, YJYoo, JKim, BBaik, SKim, JKim, SKim, DNam, "Efficient pathway enrichment and network analysis of GWAS summary data using GSA-SNP2", Nucleic Acids Research, Vol. 46(10), e60(2018).

* PubMed ID: 29562348

* DOI: 10.1093/nar/gky175

-> PLEASE MOVE OR MAKE A COPY OF 'DATA' FOLDER INTO YOUR INTENSIVE TEST FOLDER (I.E. LINUX, MAC OR WINDOWS SPECIFIED FOLDER) TO ALLOW THE PROGRAM TO FIND THE PREDESIGNED DATA.

* UPDATE NOTE:
-> Aug-7-2019: add an update for Ubuntu-19.04. You will need Boost library installed (sudo apt-get install libboost-all-dev)
-> Mar-7-2018: revise header terms in the output file

Features

  • 1/ 'DECENT TYPE I ERROR CONTROL' achieved by the following two processes: A) Gene scores are ‘adjusted’ to the number of SNPs assigned to each gene using monotone cubic spline trend curve. B) Adjacent genes with high inter-gene correlations within each pathway were removed
  • 2/ 'HIGH POWER AND FAST COMPUTATION' based on the random set model
  • 3/ 'NO CRITICAL FREE PARAMETER'
  • 4/ 'PROTEIN INTERACTION NETWORKS' among the member genes were visualized for the significant pathways. This function enables the user to prioritize the core sub-networks within and across the significant pathways. The STRING and HIPPIE networks are currently provided
  • 5/ 'EASY TO USE': It only requires GWAS summary data (or gene p-values) and takes only a minute or two to get results. Other powerful self-contained pathway tools require the SNP correlation input as well and take a much longer time. User can also upload their own pathway gene-sets and protein interaction networks.

User interface

Win32 (MS Windows), Command-line


Programming Language

C++, PHP, JavaScript



This is an application that can also be fetched from https://sourceforge.net/projects/gsasnp2/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


Free Servers & Workstations

Download Windows & Linux apps

  • 1
    Phaser
    Phaser
    Phaser is a fast, free, and fun open
    source HTML5 game framework that offers
    WebGL and Canvas rendering across
    desktop and mobile web browsers. Games
    can be co...
    Download Phaser
  • 2
    VASSAL Engine
    VASSAL Engine
    VASSAL is a game engine for creating
    electronic versions of traditional board
    and card games. It provides support for
    game piece rendering and interaction,
    and...
    Download VASSAL Engine
  • 3
    OpenPDF - Fork of iText
    OpenPDF - Fork of iText
    OpenPDF is a Java library for creating
    and editing PDF files with a LGPL and
    MPL open source license. OpenPDF is the
    LGPL/MPL open source successor of iText,
    a...
    Download OpenPDF - Fork of iText
  • 4
    SAGA GIS
    SAGA GIS
    SAGA - System for Automated
    Geoscientific Analyses - is a Geographic
    Information System (GIS) software with
    immense capabilities for geodata
    processing and ana...
    Download SAGA GIS
  • 5
    Toolbox for Java/JTOpen
    Toolbox for Java/JTOpen
    The IBM Toolbox for Java / JTOpen is a
    library of Java classes supporting the
    client/server and internet programming
    models to a system running OS/400,
    i5/OS, o...
    Download Toolbox for Java/JTOpen
  • 6
    D3.js
    D3.js
    D3.js (or D3 for Data-Driven Documents)
    is a JavaScript library that allows you
    to produce dynamic, interactive data
    visualizations in web browsers. With D3
    you...
    Download D3.js
  • More »

Linux commands

Ad