This is the Linux app named 123Fastq whose latest release can be downloaded as 123Fastq_v1.3.rar. It can be run online in the free hosting provider OnWorks for workstations.
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123Fastq
DESCRIPTION
123Fastq performs all the pre-processes around next-generation sequencing reads (FASTQ files) easier than ever in the field of open source tools.
Download quick user manual for the latest version:
http://Trainbit.com/files/7168391484/123Fastq_v1.3_Manual.pdf
Author:
Milad Eidi
Supervisors:
Javad Zahiri, PhD
University of California San Diego
Masoud Garshasbi, PhD
Tarbiat Modares University, Tehran, Iran
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Take care of the details and ensure you use the latest version.
We hope this helps...
Features
- Next generation sequencing reads quality check
- Quality check of paired-end reads
- Flexible trimmer
- Trim recommendations based on quality check results
- Adapter decontamination by two approaches
- Fast5 to FASTQ conversion
- SAM/BAM to FASTQ conversion
- Cross platform (unix, windows)
- Written in java
User interface
Java Swing
Programming Language
Java
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/project-123ngs/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
