This is the Linux app named FFP-Feature Frequency Profile Phylogeny to run in Linux online whose latest release can be downloaded as ffp-3.19.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named FFP-Feature Frequency Profile Phylogeny to run in Linux online with OnWorks for free.
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FFP-Feature Frequency Profile Phylogeny to run in Linux online
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DESCRIPTION
FFP (Feature frequency profile) is an alignment free comparison tool for phylogenetic analysis and text comparison. It can be applied to nucleotide sequences, complete genomes, proteomes and even used for text comparison.Features
- Comparison of Genomes, protein and nucleic acid sequences in FASTA format
- Phylip style distance matrix output
- Over a dozen distance measures
- Uses a fast alignment free method of comparison
- Implementation of fast Rabin-Karp hashing for k-mer counting
- Spaced-seed/masking hash function allows DNA/Amino Acid mismatches
Audience
Science/Research, Education
User interface
Command-line
Programming Language
Unix Shell, Perl, C
Database Environment
Flat-file
This is an application that can also be fetched from https://sourceforge.net/projects/ffp-phylogeny/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
