This is the Linux app named KaKs_Calculator2.0 whose latest release can be downloaded as KaKs_Calculator2.0.rar. It can be run online in the free hosting provider OnWorks for workstations.
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KaKs_Calculator2.0
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DESCRIPTION
This software is a toolkit of incorporating gamma series methods and sliding window strategies.Please cite the selected following reference when using the KaKs_Calculator2.0:
Da-Peng Wang, Hao-Lei Wan, Song Zhang and Jun Yu. γ-MYN: a new algorithm for estimating Ka and Ks with consideration of variable substitution rates. Biology Direct 2009, 4:20.
Dapeng Wang, Song Zhang, Fuhong He, Jiang Zhu, Songnian Hu, Jun Yu. How Do Variable Substitution Rates Influence Ka and Ks Calculations?Genomics Proteomics Bioinformatics. 2009 Sep;7(3):116-27.
Dapeng Wang, Yubin Zhang, Zhang Zhang, Jiang Zhu, Jun Yu. KaKs_Calculator 2.0: a toolkit incorporating gamma-series methods and sliding window strategies.Genomics Proteomics Bioinformatics. 2010 Mar;8(1):77-80.
This is an application that can also be fetched from https://sourceforge.net/projects/kakscalculator2/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
