This is the Linux app named PathMEN whose latest release can be downloaded as PathMen.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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PathMEN
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DESCRIPTION
PathNER is a tool for the identification of specific pathway mentions from biomedical literature. PathNER is built upon the GATE embedded framework.It's based on soft dictionary matching and rules-based detection. The dictionary is generated from ConsensusPathDB and Pathway Ontology and the rules are implemented in JAPE. Using PathNER, you can identify all occurrences of informative pathway names (e.g. 'the Wnt pathway'). PathNER can be used to assist studies that aim at uncovering associations between disease and pathways.
Audience
Science/Research
Programming Language
Java
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/pathmen/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
