This is the command glam2mask that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
glam2mask - masks a GLAM2 motif in sequences
SYNOPSIS
glam2mask [options] my_motif.glam2 my_seqs.fa
DESCRIPTION
glam2mask masks a glam2 motif out of sequences, so that weaker motifs can be found.
Masking replaces residues aligned to key positions with the symbol ´x´. By alternately
applying glam2 and glam2mask several times, it is possible to find the strongest,
second-strongest, third-strongest, etc. motifs in a set of sequences.
OPTIONS (DEFAULT SETTINGS)
-o
Output file (stdout).
-x
Mask character (x).
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