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Kinannote download for Linux

Free download Kinannote Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named Kinannote whose latest release can be downloaded as Kinannote_1.0.tar. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named Kinannote with OnWorks for free.

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Kinannote


DESCRIPTION

Kinannote identifies and classifies protein kinases in a user-provided fasta file using an HMM derived from serine/threonine protein kinases, a position specific scoring matrix derived from the HMM, and comparison with a local version of the curated kinase database from kinase.com. If the user inputs a complete proteome, additional modules evaluate the completeness of the kinome and place it in context with reference kinomes. Kinannote runs on a unix command line and depends on local hmmer 2 and Blast 2.24 installations.

Citing Kinannote:

Kinannote, a computer program to identify and classify members of the eukaryotic protein kinase superfamily
Jonathan M. Goldberg; Allison Griggs; Janet L. Smith; Brian Haas; Jennifer Wortman; Qiandong Zeng
Bioinformatics 2013; doi: 10.1093/bioinformatics/btt419

http: http://bioinformatics.oxfordjournals.org/content/29/19/2387.full

pdf: http://bioinformatics.oxfordjournals.org/content/29/19/2387.full.pdf+html



Audience

Science/Research



Programming Language

Perl


Categories

Bio-Informatics

This is an application that can also be fetched from https://sourceforge.net/projects/kinannote/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


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