This is the command notseqe that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
notseq - Write to file a subset of an input stream of sequences
SYNOPSIS
notseq -sequence seqall -exclude string -outseq seqoutall [-junkoutseq seqoutall]
notseq -help
DESCRIPTION
notseq is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Edit" command group(s).
OPTIONS
Input section
-sequence seqall
Required section
-exclude string
Enter a list of sequence names or accession numbers to exclude from the sequences read
in. The excluded sequences will be written to the file specified in the 'junkout'
parameter. The remainder will be written out to the file specified in the 'outseq'
parameter. The list of sequence names can be separated by either spaces or commas. The
sequence names can be wildcarded. The sequence names are case independent. An example
of a list of sequences to be excluded is: myseq, hs*, one two three a file containing
a list of sequence names can be specified by giving the file name preceded by a '@',
eg: '@names.dat'
Output section
-outseq seqoutall
-junkoutseq seqoutall
This file collects the sequences which you have excluded from the main output file of
sequences. Default value: /dev/null
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