This is the command sdpMatcher that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
sdpMatcher - nucleotide sequence matching using sparse dynamic programming
SYNOPSIS
sdpMatcher query target k [-indelRate delta] [-showalign] [-printsw] [-noRefine] [-indel
i] [-local] [-match m] [-sdpIndel i]
DESCRIPTION
Performs sparse dynamic programming (SDP) between pairs of sequences as they are given in
two FASTA files, called query and target for convenience. k is the size of the k-mer used
for the SDP algorithm.
Use sdpMatcher online using onworks.net services
