This is the Linux app named Generalized Pattern Matching whose latest release can be downloaded as longpattern.exe. It can be run online in the free hosting provider OnWorks for workstations.
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Generalized Pattern Matching
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DESCRIPTION
This tool is designed to solve generalized pattern matching problem, by which we only find a set of sub-patterns, ignoring the gaps in between the sub-patterns. This tool is extremely fast and also has good tolerance to errors.
Features
- pattern matching in human genome in less than one minute
- hard-disk based k-mers index
- complementary dual-seeding
- pruned DP in extending
- short seed length k has good tolerance of errors
- both positive and negative gaps can be handled
Audience
Advanced End Users
User interface
Command-line
Programming Language
C
Database Environment
Other API
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/gpatternmatch/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
