This is the command fastaq-chunker that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
fastaq_chunker - Splits sequences into equal sized chunks
DESCRIPTION
usage: fastaq_chunker [options] <infile> <out> <chunk size> <tolerance>
Splits a multi sequence file into separate files. Splits sequences into chunks of a fixed
size. Aims for chunk_size chunks in each file, but allows a little extra, so chunk can be
up to (chunk_size + tolerance), to prevent tiny chunks made from the ends of sequences
positional arguments:
infile Name of input file to be split
out Prefix of output file. If --onefile used, then name of single output file
chunk_size
Size of each chunk
tolerance
Tolerance allowed in chunk size
optional arguments:
-h, --help
show this help message and exit
--onefile
Output all the sequences in one file
--skip_all_Ns
Do not output any sequence that consists of all Ns
Use fastaq-chunker online using onworks.net services
