This is the command gt-compreads-refdecompress that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
gt-compreads-refdecompress - Decodes a given RCR (Reference Compressed Reads).
SYNOPSIS
gt compreads refdecompress [option ...] (-file file)
DESCRIPTION
-v [yes|no]
be verbose (default: no)
-qnames [yes|no]
decode read names, default is to just number them (default: no)
-ref [string]
Index file (generated by the gt encseq tool) for reference genome. (default:
undefined)
-rcr [string]
specify base name of file containing RCR. (default: undefined)
-name [string]
specify base name for decoded RCR (suffix will be ".rcr.decoded") (default: undefined)
-help
display help and exit
-version
display version information and exit
REPORTING BUGS
Report bugs to <[email protected]>.
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