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abiviewe - Online in the Cloud

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This is the command abiviewe that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


abiview - Display the trace in an ABI sequencer file

SYNOPSIS


abiview -infile infile -outseq seqout -graph xygraph [-startbase integer]
[-endbase integer] -separate boolean [-yticks boolean] [-sequence boolean]
[-window integer] [-bases string]

abiview -help

DESCRIPTION


abiview is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Data retrieval:Sequence data,Display" command
group(s).

OPTIONS


Input section
-infile infile

Output section
-outseq seqout

-graph xygraph

-startbase integer

-endbase integer
Last sequence base to report or display. If the default is set to zero then the value
of this is taken as the maximum number of bases.

-separate boolean
Default value: N

-yticks boolean
Default value: N

-sequence boolean
Default value: Y

-window integer
Default value: 40

-bases string
Default value: GATC

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