gmod_fasta2gff3.plp - Online in the Cloud

PROGRAM:

NAME

$O - Convert FASTA to simple GFF3

SYNOPSYS

% $O [options]

COMMAND-LINE OPTIONS

--fasta_dir Directory contain fasta files
(default: ./fasta)
--gfffilename Name of GFF3 file to be created
(default: ./out.gff)
--type SO type to assign to each feature
(default: EST)
--source Text to appear in source column
(default: .)
--attributes Additional tag=value pairs to appear in column 9
--nosequence Suppress the ##FASTA section (ie, don't
print DNA sequences)

DESCRIPTION

This script simply takes a collection of fasta files and converts them to simple GFF3
suitable for loading into chado.

AUTHORS

Scott Cain <[email protected]>

Copyright (c) 2006

This library is free software; you can redistribute it and/or modify it under the same
terms as Perl itself.

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