EnglishFrenchSpanish

OnWorks favicon

TVscript download for Linux

Free download TVscript Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named TVscript whose latest release can be downloaded as tvscript.zip. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named TVscript with OnWorks for free.

Follow these instructions in order to run this app:

- 1. Downloaded this application in your PC.

- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 3. Upload this application in such filemanager.

- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.

- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 6. Download the application, install it and run it.

SCREENSHOTS

Ad


TVscript


DESCRIPTION

TVscript is a tool designed to allow the user to explore the removal of transcripts associated with intra-condition read count variation that is greater than a user specified threshold. A set of updated count files is produced from the original input data in which such transcripts are absent. These updated count files can be subsequently used within downstream analysis, for example, in the identification of differentially expressed transcripts. In the latter, the extent intra-condition variation affects the final lists of identified genes ambiguously, and inconsistently, across different software designed for this task. Being able to explore the effects of removing such variation at varying thresholds increases the intuitive insight relative to both differential expression analysis and to other areas of research that use such data. Full details, and two case studies involving transcriptomic data associated with canid domestication, are available in our paper: link available shortly.



Features

  • Exploration of the effects of intra-condition variation across RNA-seq datasets
  • Complete test data example within download folder
  • Executable jar file, runs on any platform
  • Easy to install, just unzip folder


Audience

Science/Research


User interface

Console/Terminal


Programming Language

Java



This is an application that can also be fetched from https://sourceforge.net/projects/tvscript/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


Free Servers & Workstations

Download Windows & Linux apps

Linux commands

  • 1
    4ti2-rays
    4ti2-rays
    4ti2 - software package for algebraic,
    geometric and combinatorial problems on
    linear spaces ...
    Run 4ti2-rays
  • 2
    4ti2-walk
    4ti2-walk
    4ti2 - software package for algebraic,
    geometric and combinatorial problems on
    linear spaces ...
    Run 4ti2-walk
  • 3
    cpufreq-info
    cpufreq-info
    cpufreq-info - Utility to retrieve
    cpufreq kernel information SYNTAX:
    cpufreq-info [options] DESCRIPTION: A
    small tool which prints out cpufreq
    information hel...
    Run cpufreq-info
  • 4
    cpufreq-selector
    cpufreq-selector
    cpufreq-selector � tool to set CPU
    frequency ...
    Run cpufreq-selector
  • 5
    gap
    gap
    GAP - Groups, Algorithms and
    Programming DESCRIPTION: GAP is a system
    for computational discrete algebra with
    particular emphasis on computational
    group theory...
    Run gap
  • 6
    gap.real
    gap.real
    GAP - Groups, Algorithms and
    Programming DESCRIPTION: GAP is a system
    for computational discrete algebra with
    particular emphasis on computational
    group theory...
    Run gap.real
  • More »

Ad