This is the command tree_recon that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
tree_recon - Tree reconstruction
SYNOPSIS
tree_recon [OPTIONS] -m IN.DIST
DESCRIPTION
Reconstruct phylogenetic tree from Phylip matrix IN.DIST.
-h, --help
Displays this help message.
--version
Display version information
Input / Output:
-m, --matrix FILE
Name Phylip distance matrix file. Must contain at least three species. Valid
filetype is: dist.
-o, --out-file FILE
Path to write output to. Valid filetypes are: dot and newick. Default: tree.dot.
Algorithm Options:
-b, --build METHOD
Tree building method. nj: neighbour-joining, min: UPGMA single linkage, max: UPGMA
complete linkage, avg: UPGMA average linkage, wavg: UPGMA weighted average linkage.
Neighbour-joining creates an unrooted tree. We root that tree at the least joined
pair. One of nj, min, max, avg, and wavg. Default: nj.
CONTACT AND REFERENCES
For questions or comments, contact:
Tobias Rausch <[email protected]>
SeqAn Homepage:
http://www.seqan.de
VERSION
tree_recon version: 1.02 Last update July 17, 2012
Use tree_recon online using onworks.net services
