This is the command dbSwiss that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
dbSwiss - create DBM version of Swiss-Prot data
SYNOPSIS
/usr/share/librg-utils-perl/dbSwiss [OPTIONS]
/usr/share/librg-utils-perl/dbSwiss --datadir /data/swissprot --infile
/data/swissprot/uniprot_sprot.dat
/usr/share/librg-utils-perl/dbSwiss [--help] [--man]
DESCRIPTION
dbSwiss creates DBM version of Swiss-Prot data. This procedure is to replace
splitSwiss.pl. splitSwiss.pl saves Swiss-Prot records in separate files resulting in over
13 million relatively tiny files that take very long to create and rsync. dbSwiss instead
saves each record into a DBM database that is optimized for fast retrieval.
OPTIONS
-d, --datadir=path
directory of database files, default: '/mnt/project/rost_db/data/swissprot'
--debug
--nodebug
--first20
--nofirst20
process only first 20 records, for debugging
--help
-i, --infile=path
Swiss-Prot data flatfile, default:
'/mnt/project/rost_db/data/swissprot/uniprot_sprot.dat'.
--man
--quiet
--noquiet
do not print progress status
--readback
--noreadback
read records back after storing and print them
--table
name of database table and consequently the base name of database files, default:
'dbswiss'
--version
-w, --workdir=path
Optional working directory. Automatically created and removed if not defined.
Use dbSwiss online using onworks.net services
