This is the command gbseqget that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
gbseqget - format sequences from GenBank as an XML GBSet
SYNOPSIS
gbseqget [-] [-d filename] [-i filename] [-m n/p/b] [-n] [-o filename] [-v]
DESCRIPTION
gbseqget retrieves biological sequence data from GenBank (according to an input list of GI
accession numbers) and prints it out as an XML GBSet document.
OPTIONS
A summary of options is included below.
- Print usage message
-d filename
Input file name for date list (desired accessions, one per line, followed by a
blank line and a list of allowed dates, also one per line)
-i filename
Input file name for GI list (default = stdin)
-m n/p/b
Molecule type:
n Nucleotide (default)
p Protein
b Both
-n Return only new records (for which the given GI refers to an old version)
-o filename
Output file name for the XML GBSet (default = stdout)
-v Fetch SNP Variations
NOTES
The GBSet format is deprecated in favor of INSDSet, which you can produce by running
insdseqget in place of gbseqget.
Use gbseqget online using onworks.net services
