ืื ื’ืœื™ืชืฆืจืคืชื™ืชืกืคืจื“ื™

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ืกืžืœ OnWorks

ื”ื•ืจื“ืช Hadoop-BAM ืขื‘ื•ืจ ืœื™ื ื•ืงืก

ื”ื•ืจื“ ื‘ื—ื™ื ื ืืคืœื™ืงืฆื™ื™ืช Hadoop-BAM Linux ืœื”ืคืขืœื” ืžืงื•ื•ื ืช ื‘ืื•ื‘ื•ื ื˜ื• ืžืงื•ื•ื ืช, ืคื“ื•ืจื” ืžืงื•ื•ื ืช ืื• ื“ื‘ื™ืืŸ ืžืงื•ื•ื ืช

ื–ื•ื”ื™ ืืคืœื™ืงืฆื™ื™ืช ืœื™ื ื•ืงืก ื‘ืฉื Hadoop-BAM ืฉืืช ื”ื’ืจืกื” ื”ืื—ืจื•ื ื” ืฉืœื” ื ื™ืชืŸ ืœื”ื•ืจื™ื“ ื›-hadoop-bam-7.1.0.tar.gz. ื ื™ืชืŸ ืœื”ืคืขื™ืœ ืื•ืชื• ื‘ืื•ืคืŸ ืžืงื•ื•ืŸ ื‘ืกืคืง ื”ืื™ืจื•ื— ื”ื—ื™ื ืžื™ OnWorks ืขื‘ื•ืจ ืชื—ื ื•ืช ืขื‘ื•ื“ื”.

ื”ื•ืจื“ ื•ื”ืคืขืœ ื‘ืื™ื ื˜ืจื ื˜ ืืช ื”ืืคืœื™ืงืฆื™ื” ื”ื–ื• ื‘ืฉื Hadoop-BAM ืขื OnWorks ื‘ื—ื™ื ื.

ื‘ืฆืข ืืช ื”ื”ื•ืจืื•ืช ื”ื‘ืื•ืช ื›ื“ื™ ืœื”ืคืขื™ืœ ืืช ื”ืืคืœื™ืงืฆื™ื” ื”ื–ื•:

- 1. ื”ื•ืจื“ ืืช ื”ื™ื™ืฉื•ื ื”ื–ื” ืœืžื—ืฉื‘ ืฉืœืš.

- 2. ื”ื–ืŸ ื‘ืžื ื”ืœ ื”ืงื‘ืฆื™ื ืฉืœื ื• https://www.onworks.net/myfiles.php?username=XXXXX ืขื ืฉื ื”ืžืฉืชืžืฉ ืฉืืชื” ืจื•ืฆื”.

- 3. ื”ืขืœื” ืืช ื”ื™ื™ืฉื•ื ื”ื–ื” ื‘ืžื ื”ืœ ืงื‘ืฆื™ื ื›ื–ื”.

- 4. ื”ืคืขืœ ืืช ื”ืืžื•ืœื˜ื•ืจ ื”ืžืงื•ื•ืŸ ืฉืœ OnWorks Linux ืื• Windows ืžืงื•ื•ืŸ ืื• ืืžื•ืœื˜ื•ืจ ืžืงื•ื•ืŸ ืฉืœ MACOS ืžืืชืจ ื–ื”.

- 5. ืžืžืขืจื›ืช ื”ื”ืคืขืœื” OnWorks Linux ืฉื–ื” ืขืชื” ื”ืชื—ืœืช, ืขื‘ื•ืจ ืืœ ืžื ื”ืœ ื”ืงื‘ืฆื™ื ืฉืœื ื• https://www.onworks.net/myfiles.php?username=XXXXX ืขื ืฉื ื”ืžืฉืชืžืฉ ื”ืจืฆื•ื™.

- 6. ื”ื•ืจื“ ืืช ื”ืืคืœื™ืงืฆื™ื”, ื”ืชืงืŸ ืื•ืชื” ื•ื”ืคืขืœ ืื•ืชื”.

Hadoop-BAM


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ืชื™ืื•ืจ

Hadoop-BAM ื”ื™ื ืกืคืจื™ื™ืช Java ืœืžื ื™ืคื•ืœืฆื™ื” ืฉืœ ืงื‘ืฆื™ื ื‘ืชื‘ื ื™ื•ืช ื‘ื™ื•ืื™ื ืคื•ืจืžื˜ื™ืงื” ื ืคื•ืฆื•ืช ืชื•ืš ืฉื™ืžื•ืฉ ื‘ืžืกื’ืจืช Hadoop MapReduce ืขื Picard SAM JDK, ื•ื›ืœื™ ืฉื•ืจืช ืคืงื•ื“ื” ื”ื“ื•ืžื™ื ืœ-SAMtools.

ืคื•ืจืžื˜ื™ ื”ืงื‘ืฆื™ื ื”ื ืชืžื›ื™ื ื›ืขืช ื”ื BAM, SAM, FASTQ, FASTA, QSEQ, BCF ื•-VCF.

ืœืชื™ืื•ืจ ืืจื•ืš ื™ื•ืชืจ ื‘ืจืžื” ื’ื‘ื•ื”ื” ืฉืœ Hadoop-BAM, ืขื™ื™ืŸ ื‘ืžืืžืจ "Hadoop-BAM: ื™ืฉื™ืจื•ืช ืžื ื™ืคื•ืœืฆื™ื” ืฉืœ ื ืชื•ื ื™ ืจืฆืฃ ื”ื“ื•ืจ ื”ื‘ื ื‘ืขื ืŸ" ื‘ื‘ื™ื•ืื™ื ืคื•ืจืžื˜ื™ืงื” ื›ืจืš 28 ื’ื™ืœื™ื•ืŸ 6 ืขืž' 876-877, ื–ืžื™ืŸ ื‘ืื™ื ื˜ืจื ื˜ ื‘ื›ืชื•ื‘ืช: http://dx.doi.org/10.1093/bioinformatics/bts054

ืฉื™ืžื• ืœื‘ ืฉื—ืœืง ื”ืกืคืจื™ื™ื” ืฉืœ Hadoop-BAM ืžื™ื•ืขื“ ื‘ืขื™ืงืจ ืœืžืคืชื—ื™ื ื‘ืขืœื™ ื ื™ืกื™ื•ืŸ ื‘ืฉื™ืžื•ืฉ ื‘-Hadoop. ื›ืœื™ ืฉื•ืจืช ื”ืคืงื•ื“ื” ืฉืœ Hadoop-BAM ืฆืจื™ื›ื™ื ืœื”ื™ื•ืช ืžื•ื‘ื ื™ื ืœื›ืœ ื”ืžืฉืชืžืฉื™ื, ืืš ื”ื ืžื•ื’ื‘ืœื™ื ื‘ื”ื™ืงืฃ.

ืขื™ื™ืŸ ื‘ืคืจื•ื™ืงื˜ SeqPig ืœืžืžืฉืง ื‘ืจืžื” ื’ื‘ื•ื”ื” ื™ื•ืชืจ ืœืคื•ืจืžื˜ื™ ื”ืงื‘ืฆื™ื ื”ื ืชืžื›ื™ื ืขืœ ื™ื“ื™ Hadoop-BAM: http://seqpig.sourceforge.net

ืจืื” ื—ื•ืชื ืขื‘ื•ืจ ื›ืœื™ ื™ื™ืฉื•ืจ ืงืจื™ืื” ืžื‘ื•ืกืกื™ Hadoop, ื—ื•ืชื: http://biodoop-seal.sourceforge.net



ืงื”ืœ

ืžืคืชื—ื™ื



ืฉืคืช ืชื›ื ื•ืช

Java


ื›ืœ ื”ืงื˜ื’ื•ืจื™ื•ืช

ื‘ื™ื•-ืื™ื ืคื•ืจืžื˜ื™ืงื”, ืกืคืจื™ื•ืช

ื–ื•ื”ื™ ืืคืœื™ืงืฆื™ื” ืฉื ื™ืชืŸ ืœื”ื‘ื™ื ื’ื ืž-https://sourceforge.net/projects/hadoop-bam/. ื–ื” ื”ืชืืจื— ื‘-OnWorks ืขืœ ืžื ืช ืœื”ืคืขื™ืœ ืื•ืชื• ื‘ืื™ื ื˜ืจื ื˜ ื‘ืฆื•ืจื” ื”ืงืœื” ื‘ื™ื•ืชืจ ืžืื—ืช ืžืžืขืจื›ื•ืช ื”ื”ืคืขืœื” ื”ื—ื™ื ืžื™ื•ืช ืฉืœื ื•.


ืฉืจืชื™ื ื•ืชื—ื ื•ืช ืขื‘ื•ื“ื” ื‘ื—ื™ื ื


ื”ื•ืจื“ ืืคืœื™ืงืฆื™ื•ืช Windows & Linux


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