This is the Linux app named FusionCatcher to run in Linux online whose latest release can be downloaded as fusioncatcher_v1.20.zip. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named FusionCatcher to run in Linux online with OnWorks for free.
Follow these instructions in order to run this app:
- 1. Downloaded this application in your PC.
- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 3. Upload this application in such filemanager.
- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.
- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.
- 6. Download the application, install it and run it.
FusionCatcher to run in Linux online
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DESCRIPTION
FusionCatcher searches for novel/known somatic fusion genes, translocations, and chimeras in RNA-seq data (paired-end reads from Illumina NGS platforms like Solexa and HiSeq) from diseased samples.The aims of FusionCatcher are:
- very good detection rate for finding candidate fusion genes,
- very easy to use (i.e. no a priori knowledge of databases and bioinformatics is needed in order to run FusionCatcher),
- very good detection of challenging fusion genes, like for example IGH fusions, CIC fusions, DUX4 fusions, CRLF2 fusions, TCF3 fusions, etc.
- to be as automatic as possible (i.e. the FusionCatcher will choose automatically the best parameters in order to find candidate fusion genes, e.g. finding automatically the adapters, building the exon-exon junctions automatically based on the length of the input reads, etc.) while providing the best possible detection rate for finding fusion genes.
Audience
Science/Research
Programming Language
Python
This is an application that can also be fetched from https://sourceforge.net/projects/fusioncatcher/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
