EnglishFrenchSpanish

OnWorks favicon

xfm2def - Online in the Cloud

Run xfm2def in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command xfm2def that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


xfm2def - convert a MNI transform file to a deformation volume

SYNOPSIS


xfm2def [options] input.xfm def_vol.mnc

DESCRIPTION


xfm2def takes an input transform input.xfm that can consist of a series of concatenated
transforms in a single xfm file and converts this into a single deformation volume that is
output as def_vol.mnc. Note that the output is not a tranform file itself, you can then
make use of this volume in a MINC tranform by creating an .xfm file as such:

MNI Transform File

Transform_Type = Grid_Transform;
Displacement_Volume = def_vol.mnc;

The output resolution and sampling of the deformation grid must be specified or a default
size will be used. (100x100x100 1mm steps centred around the origin).

OPTIONS


-help Print summary of command-line options and exit.

-version
Print the program's version number and exit.

-verbose
Print out extra progress information while running.

-clobber
Overwrite any existing output file

-xnelements nx
Number of elements along the xspace dimension.

-ynelements ny
Number of elements along the yspace dimension.

-znelements nz
Number of elements along the zspace dimension.

-xstep xstep
Step between voxels along the xspace dimension.

-ystep ystep
Step between voxels along the yspace dimension.

-zstep zstep
Step between voxels along the zspace dimension.

-xstart xstart
Position of centre of first voxel along the xspace dimension.

-ystart ystart
Position of centre of first voxel along the yspace dimension.

-zstart zstart
Position of centre of first voxel along the zspace dimension.

-xdircos x1 x2 x3
Direction cosines for the xspace dimension.

-ydircos y1 y2 y3
Direction cosines for the yspace dimension.

-zdircos z1 z2 z3
Direction cosines for the zspace dimension.

Use xfm2def online using onworks.net services


Free Servers & Workstations

Download Windows & Linux apps

  • 1
    PostInstallerF
    PostInstallerF
    PostInstallerF will install all the
    software that Fedora Linux and others
    doesn't include by default, after
    running Fedora for the first time. Its
    easy for...
    Download PostInstallerF
  • 2
    strace
    strace
    The strace project has been moved to
    https://strace.io. strace is a
    diagnostic, debugging and instructional
    userspace tracer for Linux. It is used
    to monitor a...
    Download strace
  • 3
    gMKVExtractGUI
    gMKVExtractGUI
    A GUI for mkvextract utility (part of
    MKVToolNix) which incorporates most (if
    not all) functionality of mkvextract and
    mkvinfo utilities. Written in C#NET 4.0,...
    Download gMKVExtractGUI
  • 4
    JasperReports Library
    JasperReports Library
    JasperReports Library is the
    world's most popular open source
    business intelligence and reporting
    engine. It is entirely written in Java
    and it is able to ...
    Download JasperReports Library
  • 5
    Frappe Books
    Frappe Books
    Frappe Books is a free and open source
    desktop book-keeping software that's
    simple and well-designed to be used by
    small businesses and freelancers. It'...
    Download Frappe Books
  • 6
    Numerical Python
    Numerical Python
    NEWS: NumPy 1.11.2 is the last release
    that will be made on sourceforge. Wheels
    for Windows, Mac, and Linux as well as
    archived source distributions can be fou...
    Download Numerical Python
  • More »

Linux commands

Ad