This is the command seealsoe that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
seealso - Finds programs with similar function to a specified program
SYNOPSIS
seealso -search string [-explode boolean] -emboss boolean -embassy boolean
-showembassy string [-outfile outfile] [-html toggle] [-groups boolean]
-colon boolean
seealso -help
DESCRIPTION
seealso is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Documentation" command group(s).
OPTIONS
Input section
-search string
Enter the name of an EMBOSS program
Additional section
-explode boolean
The groups that EMBOSS applications belong to have two forms, exploded and not
exploded. The exploded group names are more numerous and often vaguely phrased than
the non-exploded ones. The exploded names are formed from definitions of the group
names that start like NAME1:NAME2 and which are then expanded into many combinations
of the names as: 'NAME1', 'NAME2', 'NAME1 NAME2', NAME2 NAME1'. The non-expanded names
are simply like: 'NAME1 NAME2'. Using expanded group names will find many more
programs which share at least some of the expanded names than using the non-exploded
names and so you will get more programs reported as sharing a similar function than
you will if you specify that you wish to use non-exploded names Default value: N
Advanced section
-emboss boolean
If you use this option then EMBOSS program documentation will be searched. If this
option is set to be false, then only the EMBASSY programs will be searched (if the
-embassy option is true). EMBASSY programs are not strictly part of EMBOSS, but use
the same code libraries and share the same look and feel, but are generally developed
by people who wish the programs to be outside of the GNU General Public License scheme
Default value: Y
-embassy boolean
If you use this option then EMBASSY program documentation will be searched. If this
option is set to be false, then only the EMBOSS programs will be searched (if the
-emboss option is true). EMBASSY programs are not strictly part of EMBOSS, but use the
same code libraries and share the same look and feel, but are generally developed by
people who wish the programs to be outside of the GNU General Public License scheme
Default value: Y
-showembassy string
If you use this option then this EMBASSY package program documentation will be
searched. EMBASSY programs are not strictly part of EMBOSS, but use the same code
libraries and share the same look and feel, but are generally developed by people who
wish the programs to be outside of the GNU General Public License scheme
Output section
-outfile outfile
Default value: stdout
Html section
-html toggle
If you are sending the output to a file, this will format it for displaying as a table
in a WWW document. Default value: N
-groups boolean
If you use this option, then only the group names will output to the file Default
value: N
-colon boolean
The groups that EMBOSS applications belong to have up to two levels, for example the
primary group 'ALIGNMENT' has several sub-groups, or second-level groups, e.g.:
CONSENSUS, DIFFERENCES, DOT PLOTS, GLOBAL, LOCAL, MULTIPLE. To aid programs that parse
the output of seealso that require the names of these subgroups, a colon ':' will be
placed between the first and second level of the group name if this option is true.
Default value: N
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