This is the Linux app named TI2BioP to run in Linux online whose latest release can be downloaded as TI2BioP_ver_3.0.zip. It can be run online in the free hosting provider OnWorks for workstations.
Download and run online this app named TI2BioP to run in Linux online with OnWorks for free.
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TI2BioP to run in Linux online
DESCRIPTION
TI2BioP allows mainly the calculation of topological indices (spectral moments) derived from inferred and artificial 2D structures of DNA, RNA and proteins being possible to carry out a structure-function correlation irrespective of sequence alignments.TI2BioP version 3.0 is a python platform with a graphical interface designed for Windows, Linux and Mac OS.
Features
- DNA/RNA and protein sequences are arranged into an artificial 2D space
- 2D-RNA folding information contained in Xfasta and CTs is imported
- Spectral Moments as Topological Indices (TIs) are calculated from 2D artificial and more accurate DNA/RNA and protein graphs
- TIs are used to develop alignment-free (AF) models for functional/structural annotation
- TIs are also used to estimate (AF) distances for phylogenetic analyses
Audience
Science/Research, Education
User interface
Gnome, Win32 (MS Windows)
Programming Language
Python, Delphi/Kylix
This is an application that can also be fetched from https://sourceforge.net/projects/ti2biop/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
