fastaq-add_indels - Online in the Cloud

PROGRAM:

NAME

fastaq_add_indels - Deletes or inserts bases at given position(s)

DESCRIPTION

usage: fastaq_add_indels [options] <infile> <outfile>

Deletes or inserts bases at given position(s)

positional arguments:
infile Name of input file

outfile
Name of output file

optional arguments:
-h, --help
show this help message and exit

-d Name:start:bases, --delete Name:start:bases
Delete the given bases from the given sequence. Format same as samtools view:
name:start-end. This option can be used multiple times (once for each region to
delete). Overlapping coords will be merged before deleting

--delete_range P,start,step
Deletes bases starting at position P in each sequence of the input file. Deletes
start + (n-1)*step bases from sequence n.

-i Name:start:bases, --insert Name:start:bases
Insert a random string of bases at the given position. Format is
name:position:number_to_add. Bases are added after the position. This option can be
used multiple times

--insert_range P,start,step
Inserts random bases starting after position P in each sequence of the input file.
Inserts start + (n-1)*step bases into sequence n.

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