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GapFiller download for Linux

Free download GapFiller Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named GapFiller whose latest release can be downloaded as GapFiller-1.1.1.zip. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named GapFiller with OnWorks for free.

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- 1. Downloaded this application in your PC.

- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 3. Upload this application in such filemanager.

- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.

- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 6. Download the application, install it and run it.

GapFiller


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DESCRIPTION

GapFiller is a seed-and-extend local assembler to fill the gap within paired reads.
It can be used for both DNA and RNA and it has been tested on Illumina data.
GapFiller can be used whenever a sequence is to be assembled starting from reads lying on its ends, provided a loose estimate of sequence length.



Features

  • Supported input format: FASTQ (.gz, .bz2), FASTA (.gz, .bz2), SAM, BAM
  • Highly customizable assembly parameters
  • Possibility to specify different datasets for seeding and assembly
  • Possibility to store layout information (read position and orientation within assembled contigs)

User interface

Command-line


Programming Language

C++


Categories

Bio-Informatics

This is an application that can also be fetched from https://sourceforge.net/projects/gapfiller/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


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