This is the command ali2gff that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
ali2gff - Module to translate a MUMmer output files into gff formatted output.
SYNOPSIS
ali2gff [-r] [-t <.|0|1|2>] [-x <name>] [-y <name>] [-H] [-f] [-h] <MUMmer_output_file>
OPTIONS
-h, --help
Show summary of options.
-r Interchange the order of sequences (sequence 1 on y-axis, sequence 2 on x-axis).
-t <.|0|1|2>
Put label 'frame' in gff output.
-x <name>
Specify the species name for species1 (default: "Seq1").
-y <name>
Specify the species name for species2 (default: "Seq2").
-i Ignore full sequence identities.
-f Write output to file.
Use ali2gff online using onworks.net services