This is the command arden-analyze that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
arden-analyze - analyze the results of the artificial reference genome mapping
SYNOPSIS
arden-analyze [options] [INPUT FILE] [OUTPUTFOLDER] ...
DESCRIPTION
Script to analyze the results of the artificial reference genome mapping. This script
identifies the putative TPs / FPs on a specific data set (reads).
OPTIONS
OUTPUTFOLDER
path to output destination folder.
INPUT FILE
ppath to ini file. To get the required format have a look at the example files.
--version
show program's version number and exit
-h, --help
show this help message and exit
-p PHRED, --phred=PHRED
Specify the PHRED encoding of the input reads i.e. Illumina 1.3+ = -p 33.[default:
33]
-r RANK, --internalrank=RANK
Use internal ranking for reads (needed if the read names cannot be
lexicographically be sorted in the same way in python and your OS by sam
tools).[default:1]
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