This is the command asn2fsa that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
asn2fsa - convert biological sequence data from ASN.1 to FASTA
SYNOPSIS
asn2fsa [-] [-A acc] [-D] [-E] [-H] [-L filename] [-T] [-a type] [-b] [-c] [-d path]
[-e N] [-f path] [-g] [-h filename] [-i filename] [-k] [-l] [-m] [-o filename] [-p path]
[-q filename] [-r] [-s] [-u] [-v filename] [-x str] [-z]
DESCRIPTION
asn2fsa converts biological sequence data from ASN.1 to FASTA.
OPTIONS
A summary of options is included below.
- Print usage message
-A acc Accession to fetch
-D Use Dash for Gap
-E Extended Seq-ids
-H HTML spans
-L filename
Log file
-T Use Threads
-a type
Input ASN.1 type:
a Automatic (default)
z Any
e Seq-entry
b Bioseq
s Bioseq-set
m Seq-submit
t batch processing (suitable for official releases; autodetects specific type)
-b Bioseq-set is Binary
-c Bioseq-set is Compressed
-d path
Path to ReadDB Database
-e N Line length (70 by default; may range from 10 to 120)
-f path
Path to indexed FASTA data
-g Expand delta gaps into Ns
-h filename
Far component cache output file name
-i filename
Single input file (standard input by default)
-k Local fetching
-l Lock components in advance
-m Master style for near segmented sequences
-o filename
Nucleotide Output file name
-p path
Path to ASN.1 Files
-q filename
Quality score output file name
-r Remote fetching from NCBI
-s Far genomic contig for quality scores
-u Recurse
-v filename
Protein output file name
-x str File selection substring (.ent by default) [String]
-z Print quality score gap as -1
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