This is the command bam-read that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
bam-read - Parse bam files after multi-mapping reads have been assigned and aggregate read
mapping information by contig.
SYNOPSIS
Currently captured:
- name
- bases mapped
- edit distance
- bridges
- length
- reads mapped
- both mapped
- proper pair
- good
- uncovered bases
- mean mapq
- probability of coverage not being segmented
DESCRIPTION
bam-read version 1.0.0 Usage: bam-read <bam_file> <output_csv> <nullprior (optional)>
example: bam-read in.bam out.csv 0.95
Usage: bam-read <bam_file> <output_csv> <nullprior (optional)>
example: bam-read in.bam out.csv 0.95
Use bam-read online using onworks.net services