This is the command bp_mrtransp that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
bp_mrtrans - implement a transformer of alignments from protein to mrna coordinates
SYNOPSIS
Usage:
bp_mrtrans -i inputfile -o outputfile [-if input format] [-of output format] [-s cDNA
sequence database] [-sf cDNA sequence format] [-h]
DESCRIPTION
This script will convert a protein alignment back into a cDNA. Loosely based on Bill
Pearson's mrtrans.
The options are:
-o filename - the output filename [default STDOUT]
-of format - output sequence format
(multiple sequence alignment)
[default phylip]
-i filename - the input filename [required]
-if format - input sequence format
(multiple sequence alignment)
[ default clustalw]
-s --seqdb filename - the cDNA sequence database file
-sf --seqformat - the cDNA seq db format (flatfile sequence format)
-h - this help menu
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