This is the command bp_multi_hmmsearch.plp that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
multi_hmmsearch - perform a hmmsearch into multiple FASTA files using
an INDEX file
SYNOPSIS
multi_hmmsearch -p hmm_file [-i] -f index_file
DESCRIPTION
Not technically a Bio::Tools::Run script as this doesn't use any Bioperl or Bioperl-run
components but it's useful.
Mandatory Options:
-p HMM profile to use for the search.
-f INDEX file that contains a list of FASTA files for the multiple
search.
Special Options:
-i Create a new index file with the resulting hmms files. This is
useful if you want to pass this list as input arguments into
another programs.
-h Show this documentation.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send
your comments and suggestions preferably to the Bioperl mailing list. Your participation
is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their
resolution. Bug reports can be submitted via the web:
http://redmine.open-bio.org/projects/bioperl/
Use bp_multi_hmmsearch.plp online using onworks.net services