This is the command bp_search2BSMLp that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
search2bsml - Turn SearchIO parseable reports(s) into a BSML report
SYNOPSIS
Usage:
search2bsml [-o outputfile] [-f reportformat] [-i inputfilename] OR file1 file2 ..
DESCRIPTION
This script will turn a protein Search report (BLASTP, FASTP, SSEARCH, AXT, WABA, SIM4)
into a BSML File.
The options are:
-i infilename - (optional) inputfilename, will read
either ARGV files or from STDIN
-o filename - the output filename [default STDOUT]
-f format - search result format (blast, fasta,waba,axt)
(ssearch is fasta format). default is blast.
-h - this help menu
Additionally specify the filenames you want to process on the command-line. If no files
are specified then STDIN input is assumed. You specify this by doing: search2gff < file1
file2 file3
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