This is the command chainsaw that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
chainsaw - Cut a gene tree based on a reconciliation
SYNOPSIS
chainsaw [OPTIONS] reconciled-gene-tree species-tree
DESCRIPTION
reconciled-gene-tree is the filename of the file containing trees in PRIME format. Notice
that the node id is optional and if left out all species nodeswill be used recursively.
species-tree is the species tree
OPTIONS
--help Display help (this text).
-V, --version
Print version and exit
-g, --guest-tree-format primeOrHybrid|inputxml
The input format. Default is primeOrHybrid
-h, --host-tree-format primeOrHybrid|inputxml
The input format of the host tree. Default is primeOrHybrid
-x, --node-name=STRING
A named species node to cut at
-i, --node-id=INT
The numerical id of a species node to cut at
EXIT STATUS
0 Successful program execution.
1 Some error occurred
URL
The prime-phylo home page: http://prime.sbc.su.se
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