cmtk-filter - Online in the Cloud

PROGRAM:

NAME

filter - Filter a volume image

SYNOPSIS

filter [options] input output filter [options] [-s,--studholme] input output average
subject img0 [img1...] filter [options] [-R,--rohlfing] input output subject

DESCRIPTION

This tool applies spatial filtering operators, including cnotent-sensitive opersators,
based on selective Gaussian kernels.

OPTIONS

Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.

--help-all
Write complete list of basic and advanced command line options to standard output.

--wiki
Write list of command line options to standard output in MediaWiki markup.

--man
Write man page source in 'nroff' markup to standard output.

--version
Write toolkit version to standard output.

--echo
Write the current command line to standard output.

--verbose-level <integer>
Set verbosity level.

--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Main Options
--gaussian <float>, -g <float>
Gaussian filter width (sigma) [Default: disabled]

--radius <float>, -r <float>
Filter radius (truncated outside) [Default: 2]

--mask <string>, -m <string>
Binary mask file name [Default: NONE]

--studholme, -s
Use Studholme's consistent filtering

--bin-width <float>, -b <float>
Intensity bin width for consistent filtering [Default: 10]

--rohlfing, -R
Use Rohlfing's single-image consistent filtering

--intensity-gaussian <float>, -G <float>
Intensity gaussian sigma for consistent filtering [Default: 0]

Image/Transformation Database
--db <string>
Path to image/transformation database that should be updated with the newly created
image. [Default: NONE]

AUTHORS

Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.
Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

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