cmtk-fit_spline_dfield - Online in the Cloud

PROGRAM:

NAME

fit_spline_dfield - Deformation Field to Transformation

SYNOPSIS

fit_spline_dfield InputDField OutputXform

DESCRIPTION

Fit a parametric nonrigid transformation (B-spline free-form deformation) to a deformation
field

OPTIONS

Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.

--help-all
Write complete list of basic and advanced command line options to standard output.

--wiki
Write list of command line options to standard output in MediaWiki markup.

--man
Write man page source in 'nroff' markup to standard output.

--version
Write toolkit version to standard output.

--echo
Write the current command line to standard output.

--verbose-level <integer>
Set verbosity level.

--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Input Options
--absolute
Input is an absolute transformation field [x maps to input(x)] [This is the default]

--relative
Input is relative deformation field, e.g., a gradient or force field [x maps to
x+input(x)]

Fitting Options
--levels <integer>
Number of levels in the multi-level B-spline approximation procedure. [Default: 1]

--fit-affine-first
Fit affine transformation first, then initialize spline with it.

Output Options
--final-cp-spacing <double>
Final control point grid spacing of the output B-spline transformation. [Default: 0]

--final-cp-dims <string>
Final control point grid dimensions (i.e., number of controlpoints) of the output B-
spline transformation. To be provided as 'dimX,dimY,dimZ'. [Default: NONE]

AUTHORS

Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.
Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

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