cmtk-groupwise_init - Online in the Cloud

PROGRAM:

NAME

groupwise_init - Affine initialization for groupwise registration

SYNOPSIS

groupwise_init [options] image0 [image1 ...]

DESCRIPTION

Compute initial affine alignment for a group of input images, which can be used as an
input for groupwise registration

OPTIONS

Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.

--help-all
Write complete list of basic and advanced command line options to standard output.

--wiki
Write list of command line options to standard output in MediaWiki markup.

--man
Write man page source in 'nroff' markup to standard output.

--version
Write toolkit version to standard output.

--echo
Write the current command line to standard output.

--verbose-level <integer>
Set verbosity level.

--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Main Options
--template <string>, -t <string>
Input filename for pre-defined template image. [Default: NONE]

--output-root <string>, -O <string>
Root directory for all output files. [Default: NONE]

--output <string>, -o <string>
Output filename for groupwise registration archive. [Default: groupwise.xforms ]

--output-average <string>
Output filename for registered average image. [Default: average.nii ]

--average-cubic
Use cubic (rather than linear) interpolation for average image.

--no-output-average
Do not write average image.

--align-centers-of-mass
Initially align centers of mass rather than centers of bounding boxes.

--init-scales
Initialize scale factors using first-order moments

--center-template
Center aligned images in template grid field of view.

AUTHORS

Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.
Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

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