This is the command cmtk-stream_pixels that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
stream_pixels - Stream pixel data from one or more images to Standard Output.
SYNOPSIS
stream_pixels ImagePaths
DESCRIPTION
This tool reads one or more images and writes all their pixels to standard output in
binary form. Optionally, each image can be reoriented to a specified anatomical
orientation and/or converted to a different data type. This is useful for piping image
data through a pipeline, e.g., the Camino DTI toolkit.
OPTIONS
Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.
--help-all
Write complete list of basic and advanced command line options to standard output.
--wiki
Write list of command line options to standard output in MediaWiki markup.
--man
Write man page source in 'nroff' markup to standard output.
--version
Write toolkit version to standard output.
--echo
Write the current command line to standard output.
--verbose-level <integer>
Set verbosity level.
--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).
--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).
Main Options
--reorient <string>
Reorient all images to anatomy-based standard orientation, e.g., RAS or LPS for
axial. Default: no reorientation. [Default: NONE]
--change-endian
Change endianness. Default: native endianness.
--convert
Convert data to new scalar type. Default: no conversion. Supported values: "char",
"byte", "short", "ushort", "int", "uint", "float", "double", or use one of the
following:
--char
8 bits, signed integer
--byte
8 bits, unsigned integer
--short
16 bits, signed integer
--ushort
16 bits, unsigned integer
--int
32 bits, signed integer
--uint
32 bits, unsigned integer
--float
32-bits, single-precision floating point
--double
64 bits, double-precision floating point
AUTHORS
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.
Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
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