This is the command complexe that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
complex - Find the linguistic complexity in nucleotide sequences
SYNOPSIS
complex -sequence seqall -lwin integer -step integer -jmin integer -jmax integer
-omnia toggle -sim integer -freq boolean -print boolean -outfile outfile
-ujtablefile outfile -outseq seqoutall
complex -help
DESCRIPTION
complex is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Nucleic:Composition" command group(s).
OPTIONS
Input section
-sequence seqall
-lwin integer
Default value: 100
-step integer
Displacement of the window over the sequence Default value: 5
-jmin integer
Default value: 4
-jmax integer
Default value: 6
Advanced section
-omnia toggle
Calculate over a set of sequences Default value: N
-sim integer
Calculate the linguistic complexity by comparison with a number of simulations having
a uniform distribution of bases
-freq boolean
Execute the simulation of a sequence based on the base frequency of the original
sequence Default value: N
Output section
-print boolean
Generate a file named UjTable containing the values of Uj for each word j in the real
sequence(s) and in any simulated sequences Default value: N
-outfile outfile
-ujtablefile outfile
Default value: complex.ujtable
-outseq seqoutall
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