This is the command contig_to_chr_coords that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
contig_to_chr_coords - tophat component taking NCBI seq_contig file and maps contig coords
DESCRIPTION
contig_to_chr_coords: Takes the NCBI seq_contig file and maps contig coords to whole
chromosome coords in a GTF, GFF, or BED file
contig_to_chr_coords.py <format_flag> <seq_contig.md>
<junctions.bed|transcripts.gff|transcripts.gtf>
for help use --help
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