This is the command cpgreporte that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
cpgreport - Identify and report CpG-rich regions in nucleotide sequence(s)
SYNOPSIS
cpgreport -sequence seqall -score integer -outfile outfile -outfeat featout
cpgreport -help
DESCRIPTION
cpgreport is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Nucleic:CpG Islands" command group(s).
OPTIONS
Input section
-sequence seqall
Required section
-score integer
This sets the score for each CG sequence found. A value of 17 is more sensitive, but
28 has also been used with some success. Default value: 17
Output section
-outfile outfile
-outfeat featout
File for output features
Use cpgreporte online using onworks.net services
