This is the command dotmatchere that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
dotmatcher - Draw a threshold dotplot of two sequences
SYNOPSIS
dotmatcher -asequence sequence -bsequence sequence [-matrixfile matrix]
[-windowsize integer] [-threshold integer] -stretch toggle -graph graph
-xygraph xygraph
dotmatcher -help
DESCRIPTION
dotmatcher is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Alignment:Dot plots" command group(s).
OPTIONS
Input section
-asequence sequence
-bsequence sequence
-matrixfile matrix
This is the scoring matrix file used when comparing sequences. By default it is the
file 'EBLOSUM62' (for proteins) or the file 'EDNAFULL' (for nucleic sequences). These
files are found in the 'data' directory of the EMBOSS installation.
Additional section
-windowsize integer
Default value: 10
-threshold integer
Default value: 23
Output section
-stretch toggle
Display a non-proportional graph Default value: N
-graph graph
-xygraph xygraph
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