This is the command edamcleane that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
edamclean - Validate and fix EDAM OBO ontology
SYNOPSIS
edamclean -edaminfile infile -taxdirectory directory -mode selection -edamoutfile outfile
-logfile outfile -xmlfile outfile -xmloutdir outdir
edamclean -help
DESCRIPTION
edamclean is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Ontology:EDAM" command group(s).
OPTIONS
Input section
-edaminfile infile
Default value: /homes/jison/edam/EDAM.obo
-taxdirectory directory
Required section
-mode selection
Default value: Report only
Advanced section
Output section
-edamoutfile outfile
Default value: EDAM_out.obo
-logfile outfile
Default value: EDAM_out.log
-xmlfile outfile
Default value: EDAM_out.xml
-xmloutdir outdir
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