This is the command extractaligne that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
extractalign - Extract regions from a sequence alignment
SYNOPSIS
extractalign -sequence seqset -regions range -outseq seqoutall
extractalign -help
DESCRIPTION
extractalign is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Alignment,Data retrieval:Sequence data,Edit" command
group(s).
OPTIONS
Input section
-sequence seqset
Required section
-regions range
Regions to extract. A set of regions is specified by a set of pairs of positions. The
positions are integers. They are separated by any non-digit, non-alpha character.
Examples of region specifications are: 24-45, 56-78 1:45, 67=99;765..888
1,5,8,10,23,45,57,99 Default value: $(sequence.begin)-$(sequence.end)
Output section
-outseq seqoutall
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