This is the command fastaq-caf_to_fastq that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
fastaq_caf_to_fastq - Converts a CAF file to FASTQ format
DESCRIPTION
usage: fastaq_caf_to_fastq [options] <infile> <outfile>
Converts CAF file to FASTQ format
positional arguments:
infile Name of input CAF file.
outfile
Name of output FASTQ file
optional arguments:
-h, --help
show this help message and exit
-c, --clip
Use clipping info to clip reads, if present in the input CAF file (as lines of the
form "Clipping QUAL start end"). Default is to not clip
-l INT, --min_length INT
Minimum length of sequence to output [1]
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