fastaq-chunker - Online in the Cloud

This is the command fastaq-chunker that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


fastaq_chunker - Splits sequences into equal sized chunks

DESCRIPTION


usage: fastaq_chunker [options] <infile> <out> <chunk size> <tolerance>

Splits a multi sequence file into separate files. Splits sequences into chunks of a fixed
size. Aims for chunk_size chunks in each file, but allows a little extra, so chunk can be
up to (chunk_size + tolerance), to prevent tiny chunks made from the ends of sequences

positional arguments:
infile Name of input file to be split

out Prefix of output file. If --onefile used, then name of single output file

chunk_size
Size of each chunk

tolerance
Tolerance allowed in chunk size

optional arguments:
-h, --help
show this help message and exit

--onefile
Output all the sequences in one file

--skip_all_Ns
Do not output any sequence that consists of all Ns

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