This is the command fastq-clipper that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
fastq-clipper - ea-utils: removes one or more adapter sequences from the fastq file
DESCRIPTION
usage: fastq-clipper [options] <fastq-file> <adapters>
Removes one or more adapter sequences from the fastq file. Adapter sequences are
colon-delimited. Stats go to stderr, unless -o is specified.
OPTIONS
-h This help
-o FIL Output file (stats to stdout)
-p N Maximum difference percentage (10)
-m N Minimum clip length (1)
-l N Minimum remaining sequence length (15)
-x [N] Extra match length past adapter length,
N =-1 : search all N = 0 : search only up to adapter length
-e End-of-line (default)
-b Beginning-of-line (not supported yet)
Use fastq-clipper online using onworks.net services
