This is the command fdolpennye that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
fdolpenny - Penny algorithm Dollo or polymorphism
SYNOPSIS
fdolpenny -infile discretestates [-weights properties] [-ancfile properties]
[-thresh toggle] -threshold float [-howmany integer] [-howoften integer]
[-simple boolean] [-method list] -outfile outfile [-trout toggle]
-outtreefile outfile [-printdata boolean] [-progress boolean]
[-treeprint boolean] [-ancseq boolean] [-stepbox boolean]
fdolpenny -help
DESCRIPTION
fdolpenny is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Phylogeny:Discrete characters" command group(s).
OPTIONS
Input section
-infile discretestates
File containing one or more data sets
-weights properties
-ancfile properties
Additional section
-thresh toggle
Default value: N
-threshold float
Default value: 1
-howmany integer
Default value: 1000
-howoften integer
Default value: 100
-simple boolean
Default value: Y
-method list
Default value: d
Output section
-outfile outfile
-trout toggle
Default value: Y
-outtreefile outfile
-printdata boolean
Default value: N
-progress boolean
Default value: Y
-treeprint boolean
Default value: Y
-ancseq boolean
Default value: N
-stepbox boolean
Default value: N
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